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| The Intel Cluster Toolkit is a collection of MPI related tools, which is helpful when debugging, fine tuning and analyzing large MPI applications. ICT includes: * Intel C++ Compiler 11.1 * Intel Debugger 11.1 * Intel MPI Library 3.2 * Intel MPI Benchmarks 3.2 * Intel Trace Analyzer1 and Trace Collector 7.2 |
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| Each of this parts and its use at the [[Cluster|cluster environment]] in DESY Zeuthen is described next. | |
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| Intitialize the Intel compiler and Intel MPI environment: {{{#!c ini ic openmpi_intel }}} Initialize ICT environment: {{{#!c source /opt/intel/ict/3.2.2.013/ictvars.sh source /opt/products/idb/11.0/bin/intel64/idbvars.sh source /opt/products/bin/ifortvars.sh intel64 source /opt/products/bin/iccvars.sh intel64 export IDB_HOME=/opt/products/bin/ }}} |
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| Add {{{ LDFLAGS = -L$(VT_LIB_DIR) -lmpi $(VT_ADD_LIBS) }}} to the IMB Makefile. | |
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| == Producing tracing information == | == MPD daemons == TODO: machines.LINUX file TODO: mpd.hosts |
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| == Viewing tracing information and fine tuning == | Start MPD daemons on all hosts in mpd.hosts file: {{{#!c # ./sshconnectivity.exp machines.LINUX # mpdboot -n 8 --rsh=ssh -f ./mpd.hosts }}} == Tracing information == Run an application for the trace analyzer: {{{#!c # export VT_LOGFILE_FORMAT=STF; # export VT_PCTRACE=5; # export VT_PROCESS="0:N ON"; # export VT_LOGFILE_PREFIX=IMB-MPI1_inst; # rm -fr $VT_LOGFILE_PREFIX; mkdir $VT_LOGFILE_PREFIX; # mpiexec -n 2 itcpin --run -- ./IMB-MPI1 -npmin 2 PingPong; # traceanalyzer ./IMB-MPI1_inst/IMB-MPI1.stf &; }}} == Fine tuning == Invoke mpitune: {{{#!c # mpitune -f machines.LINUX -o ./ --app mpiexec -genv MPIEXEC_DEBUG 1 -n 2 ./IMB-MPI1 -np 2 PingPong # mpiexec -tune app.conf -n 4 ./IMB-MPI1 -np 2 PingPong }}} |
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| Start execution of the MPI program in debugging mode on 8 nodes each running 2 processes: {{{#!c # mpiexec -idb -genv MPIEXEC_DEBUG 1 -n 8 ./IMB-MPI1 -np 2 PingPong }}} |
Contents
1. Overview
The Intel Cluster Toolkit is a collection of MPI related tools, which is helpful when debugging, fine tuning and analyzing large MPI applications. ICT includes:
- Intel C++ Compiler 11.1
- Intel Debugger 11.1
- Intel MPI Library 3.2
- Intel MPI Benchmarks 3.2
- Intel Trace Analyzer1 and Trace Collector 7.2
2. Using ICT
Each of this parts and its use at the cluster environment in DESY Zeuthen is described next.
2.1. Setting up the environment
Intitialize the Intel compiler and Intel MPI environment: #!c ini ic openmpi_intel
Initialize ICT environment:
source /opt/intel/ict/3.2.2.013/ictvars.sh source /opt/products/idb/11.0/bin/intel64/idbvars.sh source /opt/products/bin/ifortvars.sh intel64 source /opt/products/bin/iccvars.sh intel64 export IDB_HOME=/opt/products/bin/
2.2. Compiling MPI applications with Intel MPI
Add LDFLAGS = -L$(VT_LIB_DIR) -lmpi $(VT_ADD_LIBS) to the IMB Makefile.
2.3. MPD daemons
TODO: machines.LINUX file TODO: mpd.hosts
Start MPD daemons on all hosts in mpd.hosts file:
# ./sshconnectivity.exp machines.LINUX # mpdboot -n 8 --rsh=ssh -f ./mpd.hosts
2.4. Tracing information
Run an application for the trace analyzer:
# export VT_LOGFILE_FORMAT=STF; # export VT_PCTRACE=5; # export VT_PROCESS="0:N ON"; # export VT_LOGFILE_PREFIX=IMB-MPI1_inst; # rm -fr $VT_LOGFILE_PREFIX; mkdir $VT_LOGFILE_PREFIX; # mpiexec -n 2 itcpin --run -- ./IMB-MPI1 -npmin 2 PingPong; # traceanalyzer ./IMB-MPI1_inst/IMB-MPI1.stf &;
2.5. Fine tuning
Invoke mpitune:
# mpitune -f machines.LINUX -o ./ --app mpiexec -genv MPIEXEC_DEBUG 1 -n 2 ./IMB-MPI1 -np 2 PingPong # mpiexec -tune app.conf -n 4 ./IMB-MPI1 -np 2 PingPong
2.6. Debugging
Start execution of the MPI program in debugging mode on 8 nodes each running 2 processes:
# mpiexec -idb -genv MPIEXEC_DEBUG 1 -n 8 ./IMB-MPI1 -np 2 PingPong